PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17807_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 236aa    MW: 25453.5 Da    PI: 5.6756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17807_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-1572121155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  RrC17807_p1  72 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 121
                  5699**975..6*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1772129IPR016177DNA-binding domain
SMARTSM003802.2E-2573135IPR001471AP2/ERF domain
PROSITE profilePS5103219.30973129IPR001471AP2/ERF domain
CDDcd000181.79E-1574129No hitNo description
PfamPF008472.6E-874121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-2574129IPR001471AP2/ERF domain
PRINTSPR003671.1E-57485IPR001471AP2/ERF domain
PRINTSPR003671.1E-5111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSSSSDSPKT GNKQTTTFRL DSIALPSKSS DHQSPQSSPG SSSSPSPTPR PSHSAGGSST  60
KRTTTGLSGR HSFFRGIRLR NGKWVSEIRE PRKTTRIWLG TYPVPEMAAA AYDVAALALK  120
GPDAVLNFPG LALTYVAPAS NSAAEIRAAA ARAAEMKQPD PVEKVMDPGQ HGKEEEEKAM  180
QLSSLEFMDE EDMLDMPNLL TEMAEGMLMS PPRMANPTMD DDSPENHVGD SLWSYK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324393e-45AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609473.11e-118PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ902e-97ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D3EA861e-118A0A0D3EA86_BRAOL; Uncharacterized protein
STRINGBra028291.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-81ERF family protein